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Publications

Published works in collaboration with the CF Proteomics and by its members


 

CF Proteomics publications

 

Dumit VI, Zerbes RM, Kaeser-Pebernard S, Rackiewicz M, Wall MT, Gretzmeier C, Küttner V, van der Laan M, Braun RJ, Dengjel J. (2017). Respiratory status determines the effect of emodin on cell viability. Oncotarget, doi: 10.18632/oncotarget.16396.

 

Schlicher L, Wissler M, Preiss F, Brauns-Schubert P, Jakob C, Dumit VI, Borner C, Dengjel J, Maurer U. (2016). SPATA2 promotes CYLD activity and regulates TNF-induced NF-κB signaling and cell death. EMBO Rep. 17:1485-1497.

 

Braun RJ, Zerbes RM, Steinberg F, Gris D, Dumit VI. (2016). Threading Granules in Freiburg. 2nd International Symposium on "One Mitochondrion, Many Diseases - Biological and Molecular Perspectives", a FRIAS Junior Researcher Conference, Freiburg im Breisgau, Germany, March 9th/10th, 2016. (2016). Microb Cell. 3:565-568.

 

Jacków J, Schlosser A, Sormunen R, Nyström A, Sitaru C, Tasanen K, Bruckner-Tuderman L, Franzke C-W. (2016). Generation of a Functional Non-Shedding Collagen XVII Mouse Model: Relevance of Collagen XVII Shedding in Wound Healing. J Invest Dermatol, 136:516-525.

 

Klionsky DJ, [..],Dengjel J , [..],Dumit VI et al. (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy, 12:1-222.

 

Braun JA, Sommer C, Gentier RJG, Dumit VI, Leibiger C, Paduch K, Eisenberg T, Dengjel J, Kroemer G, van Leeuwen FW, Madeo F. (2015). Mitochondrial proteostasis dictates the cytotoxicity of aberrant ubiquitin. Cell Reports, S2211-1247(15)00137-0.

 

Cianfanelli V, Fuoco C, Lorente M, Salazar M, Quondamatteo F, Gherardini PF, De Zio D, Nazio F, Antonioli M, D'Orazio M, Skobo T, Bordi M, Rohde M, Dalla Valle L, Helmer-Citterich M, Gretzmeier C, Dengjel J, Fimia GM, Piacentini M, Di Bartolomeo S, Velasco G, Cecconi F. (2015). AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation. Nat Cell Biol, 17:20-30.

 

Wrobel L, Topf U, Bragoszewski P, Wiese S , Sztolsztener ME, Oeljeklaus S, Varabyova A, Lirski M, Chroscicki P, Mroczek S, Januszewicz E, Dziembowski A, Koblowska M, Warscheid B, Chacinska A. (2015). Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol. Nature, 27:485-8.

 

Braun RJ, Dumit VI, Monpays C, Roucou X, Serrano S, St-Pierre J, Waters PJ, Bates I, Gris D. (2015). Struggling for breath in Sherbrooke. Microbial Cell, 2:208–213.

 

Estelmann S, Blank I, Feldmann A, Boll M. (2015). Two distinct old yellow enzymes are involved in naphthyl ring reduction during anaerobic naphthalene degradation. Mol Microbiol, 95:162-72.

 

Boonla C, Tosukhowong P, Spittau B, Schlosser A, Pimratana C, Krieglstein K. (2014). Inflammatory and fibrotic proteins proteomically identified as key protein constituents in urine and stone matrix of patients with kidney calculi. Clin Chim Acta, 15:81-9.

 

Cerný M, Jedelský PL, Novák J, Schlosser A, Brzobohatý B. (2014). Cytokinin modulates proteomic, transcriptomic and growth responses to temperature shocks in Arabidopsis. Plant Cell Environ, 37:1641-55.

 

Dumit, VI and Dengjel, J. (2014). The cup of youth. Cell Cycle 13, 2021.

 

Dumit, VI, Kuttner, V, Kappler, J, Piera-Velazquez, S, Jimenez, SA, Bruckner-Tuderman, L, Uitto, J, Dengjel, J. (2014). Altered MCM protein levels and autophagic flux in aged and systemic sclerosis dermal fibroblasts. J Invest Dermatol, 134:2321-2330.

 

Antonioli M, Albiero F, Nazio F, Vescovo T, Perdomo AB, Corazzari M, Marsella C, Piselli P, Gretzmeier C, Dengjel J, et al. (2014). AMBRA1 Interplay with CullinE3 Ubiquitin Ligases Regulates Autophagy Dynamics. Dev Cell, 31:734-746.

 

Chylek LA, Akimov V, Dengjel J, Rigbolt KT, Hu B, Hlavacek WS, Blagoev B. (2014). Phosphorylation site dynamics of early T-cell receptor signaling. PLoSOne9, e104240.

 

Engelke R, Riede J, Hegermann J, Wuerch A, Eimer S, Dengjel J, Mittler G. (2014). The quantitative nuclear matrix proteomeasa biochemical snapshot of nuclear organization. J Proteome Res, 13:3940-3956.

 

Kuttner V, Mack C, Gretzmeier C, Bruckner-Tuderman L, Dengjel J. (2014). Loss of collagenVII is associated with reduced transglutaminase2 abundance and activity. J Invest Dermatol, 134:2381-2389.

 

Wiese, H, Kuhlmann, K, Wiese, S, Stoepel, NS, Pawlas, M, Meyer, HE, Stephan, C, Eisenacher, M, Drepper, F, Warscheid, B. (2014) Comparisonofalternative MS/MS and bioinformatics approaches for confident phosphorylation site localization. J Proteome Res, 13:1128-1137.

 

Beck-García E, Beck-García K, Schlosser A, Schamel WW. (2013). Analysis of interactions between proteins and fatty acids or cholesterol using a fatty acid/cholesterol pull-down assay. Anal Biochem, 15:75-7.

 

Orth, JH, Fester, I, Siegert, P, Weise, M, Lanner, U, Kamitani, S, Tachibana, T, Wilson, BA, Schlosser, A, Horiguchi, Y, Aktories, K. (2013). Substrate specificity of Pasteurella multocida toxin for subunits of heterotrimeric G proteins. The FASEB Journal, 27:832-842

 

Sobrero P, Schluter JP, Lanner U, Schlosser A, Becker A, Valverde C. (2012). Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011. PLoS ONE, 7:e48494.3.

 

Haaf, E. (2012). Qualitative und quantitative Analyse der Phosphorylierung von Proteinen der circadianen Uhr. PhD dissertation, deutsche-digitale-bibliothek.de.

 

Skouloudaki K, Walz G. (2012). YAP1 recruits c-Abl to protect angiomotin-like 1 from Nedd4-mediated degradation. PLoS ONE, 7:e35735.

 

Engelke R, Becker AC, Dengjel J. (2012). The degradative inventory of the cell: proteomic insights. Antioxid Redox Signal, 17:803-12.

 

Casutt MS, Schlosser A, Buckel W, Steuber J (2012) The single NqrB and NqrC subunits in the Na+- translocating NADH: Quinone oxidoreductase (Na+-NQR) from Vibrio cholerae each carry one covalently attached FMN. Biochim Biophys Acta 1817–1817-1822.

 

Haaf E and Schlosser A (2012) Peptide and Protein Quantitation by Acid - Catalyzed 18O - Labeling of Carboxyl Groups. Anal Chem, 84:304-311.

 

Tzivelekidis T, Jank T, Pohl C, Schlosser A, Rospert S, Knudsen CR, Rodnina MV, Belyi Y, Aktories K. (2011). Aminoacyl - tRNA - Charged Eukaryotic Elongation Factor 1A Is the Bona Fide Substrate for Legionella pneumophila Effector Glucosyltransferases. PLoS ONE, 6: e29525. 6.

 

Büttner - Mainik A, Parsons J, Jérôme H, Hartmann A, Lamer S, Schaaf A, Schlosser A, Z ipfel PF, Reski R, Decker EL. (2010). Production of biologically active recombinant human Factor H in Physcomitrella. Plant Biotech J, 9:373-383.

 

Sylvester M, Kliche S, Lange S, Geithner S, Klemm C, Schlosser A, Grossmann A, Stelzl U, Schraven B, Krause E, Freund C. (2010). Adhesion and degranulation promoting adapter protein (ADAP) is a central hub for phosphotyrosine-mediated interactions in T cells. PLoS ONE, 22:e11708.

 

Seidler J, Zinn N, Haaf E, Boehm ME, Winter D, Schlosser A, Lehmann WD. (2010). Metal ion - mobilizing additives for comprehensive detection of femtomole amounts of phosphopeptides by reversed phase LC - MS. Amino Acids, 41:311-320.

 

Nishie W, Lamer S, Schlosser A, Licarete E, Franzke CW, Hofmann SC, Jackow J, Sitaru C, and Bruckner - Tuderman L. (2010). Ectodomain Shedding Generates Neoepitopes on Collagen XVII, the Major Autoantigen for Bullous Pemphigoid. J Immunol, 185:4938-4947.

 

Lang AE, Schmidt G, Schlosser A, Hey TD, Larrinua IM, Sheets JJ, Mannherz HG, Aktories K (2010) Photorhabdus luminescens Toxins ADP - Ribosylate Actin and RhoA to Force Actin Clustering. Science, 327:1139-1142.

 

Schaffer U, Schlosser A, Muller KM, Schafer A, Katava N, Baumeiste r R, Schulze E. (2010). SnAvi - a new tandem tag for high - affinity protein - complex purification. Nucl Acid Res, 38:e91. 11.

 

Fritsch A, Spassov S, Elfert S, Schlosser A, Gache Y, Meneguzzi G, Bruckner - Tuderman L. (2009). Dominant - negative Effects of COL7A1 Mutations Can be Rescued by Controlled Overexpression of Normal Collagen VII. J Biol Chem, 284:30248-30256. 

 

Orth JHC, Preuss I, Fester I, Schlosser A, Wilson, BA, Aktories, K (2009) Pasteurella multocida toxin activation of heterotrimeric G proteins by deamidation P Natl Acad Sci USA, 106:7179-7184.

 

Hung CW, Schlosser A, Wei J, Lehmann WD. (2007). Collision-induced reporter fragmentations for identification of covalently modified peptides. Anal Bioanal Chem. 389: 1003-16.

 

Other publications from CF Proteomics members

 

Bohrer C, Pfurr S, Mammadzada K, Schildge S, Plappert L, Hils M, Pous L, Rauch KS, Dumit VI, Pfeifer D, Dengjel J, Kirsch M, Schachtrup K, Schachtrup C. The balance of Id3 and E47 determines neural stem/precursor cell differentiation into astrocytes. EMBO J, 34:2804-19.

 

Haug S, Schnerch D, Halbach S, Mastroianni J, Dumit VI, Follo M, Hasenburg A, Köhler M, Dierbach H, Herzog S, Proske A, Werner M, Dengjel J, Brummer T, Laßmann S, Wäsch R, Zeiser R. Metadherin exon 11 skipping variant enhances metastatic spread of ovarian cancer. (2015). Int J Cancer, 136:2328-40.

 

Dumit VI and Dengjel J. Autophagosomal protein dynamics and influenza virus infection. (2012) Front Immunol, 14;3:43.

 

Contact

Center for Biological Systems Analysis

University of Freiburg

 

  • Address:

    Habsburgerstr. 49
    79104 Freiburg
    Germany
 
  • Delivery entrance:

    Hauptstr. 1
    79104 Freiburg
 

 

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